Reference --------- The code can be found here: `https://github.com/FranceCosta/isopeptor `_. If you have any questions, submit them here: `https://github.com/FranceCosta/isopeptor/issues `_. If you use isopeptor, please cite: .. code-block:: bibtex @article{10.1093/bioadv/vbaf049, author = {Costa, Francesco and Barringer, Rob and Riziotis, Ioannis and Andreeva, Antonina and Bateman, Alex}, title = {Isopeptor: a tool for detecting intramolecular isopeptide bonds in protein structures}, journal = {Bioinformatics Advances}, volume = {5}, number = {1}, pages = {vbaf049}, year = {2025}, month = {03}, issn = {2635-0041}, doi = {10.1093/bioadv/vbaf049}, url = {https://doi.org/10.1093/bioadv/vbaf049}, eprint = {https://academic.oup.com/bioinformaticsadvances/article-pdf/5/1/vbaf049/62375500/vbaf049.pdf}, }